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HIGHLIGHTS

2020

Marco Todescov, Gregory L. Owens, Natalia Bercovich, Jean-S ebastien L egar e, Shaghayegh Soudi, Dylan O., Kaichi Huang, Katherine L. Ostevik, Emily B. M. Drummond, Ivana Imerovski, Kathryn Lande, Mariana A. Pascual-Robles, Mihir Nanavati, Mojtaba Jahani, Winnie Cheung, S. Evan Staton, St ephane Munos, Rasmus Nielsen, Lisa A Donovan, John M. Burke, Sam Yeaman, and Loren H. Rieseberg. (2020) Massive haplotypes underlie ecotypic di erentiation in sun owers. Nature In press, s41586-020-2467-62020

Guru Radhakrishnan, Jean Keller, Melanie Rich, Tatiana Vernié, Duchesse Mbadinga Mbadinga, Ludovic Cottret, Hélène San Clemente, Cyril Libourel, Jitender Cheema, Anna-Malin Linde, D. Magnus Eklund, Shifeng Cheng, Gane Wong, Ulf Lagercrantz , Fay-Wei Li, Giles Oldroyd, Pierre-Marc Delaux (2020)  An ancestral signalling pathway is conserved in intracellular symbioses-forming plant lineages. Nature Plants, Nature Publishing Group, 2020, 6 (3), pp.280-289. ⟨10.1038/s41477-020-0613-7⟩

Guru V Radhakrishnan, Jean Keller, Melanie K Rich, Tatiana Vernié, Duchesse L Mbadinga Mbadinga, Nicolas Vigneron, Ludovic Cottret, Hélène San Clemente, Cyril Libourel, Jitender Cheema, Anna-Malin Linde, D Magnus Eklund, Shifeng Cheng, Gane K S Wong, Ulf Lagercrantz, Fay-Wei Li, Giles E D Oldroyd, Pierre-Marc Delaux. An ancestral signalling pathway is conserved in intracellular symbioses-forming plant lineages (2020) Nature Plants 2020 Mar;6(3):280-289

Emile Gluck-Thaler, Aude Cerutti, Alvaro L Perez-Quintero, Jules Butchacas, Verónica Roman-Reyna, Vishnu Narayanan Madhavan, Deepak Shantharaj, Marcus V Merfa, Céline Pesce, Alain Jauneau, Taca Vancheva, Jillian M Lang, Caitilyn Allen, Valerie Verdier, Lionel Gagnevin, Boris Szurek, Gregg T Beckham, Leonardo De La Fuente, Hitendra Kumar Patel, Ramesh V Sonti, Claude Bragard, Jan E Leach, Laurent D Noël, Jason C Slot, Ralf Koebnik, Jonathan M Jacobs. Repeated gain and loss of a single gene modulates the evolution of vascular plant pathogen lifestyles. Sciences advances.Nov 13;6(46):eabc4516. 

Thorsten Thiergart, Paloma Durán, Thomas Ellis, Nathan Vannier, Ruben Garrido-Oter,  Eric Kemen, Fabrice Roux, Carlos Alonso-Blanco, Jon Ågren, Paul Schulze-Lefert, Stéphane Hacquard (2020)  Root microbiota assembly and adaptive differentiation among European Arabidopsis populations. Nature Ecology & Evolution, Nature, 2020, 4 (1), pp.122-131. ⟨10.1038/s41559-019-1063-3⟩ 

Mathieu Hanemian, François Vasseur, Elodie Marchadier, Elodie Gilbault, Justine Bresson, Isabelle Gy, Cyrille Violle, Olivier Loudet (2020) Natural variation at FLM splicing has pleiotropic effects modulating ecological strategies in Arabidopsis thaliana. Nature Communication 2020. 11(1): p. 4140.

bárbara Hufnagel, André Marques, Alexandre Soriano, Laurence Marquès, Fanchon Divol, Patrick Doumas, Erika Sallet, Davide Mancinotti, Sébastien Carrere, William Marande, Sandrine Arribat, Jean Keller, Cécile Huneau, Thomas Blein, Delphine Aimé, Malika aguerre, Jemma Taylor, Veit Schubert, Matthew Nelson, Fernando Geu-Flores, Martin Crespi, Karine Gallardo, Pierre-Marc Delaux, Jérôme Salse, Hélène Bergès, Romain Guyot, Jérôme Gouzy, Benjamin Péret (2020) High-quality genome sequence of white lupin provides insight into soil exploration and seed quality. Nature Communication, 2020. 11(1): p. 492.

Tomas Allen Rush, Virginie Puech-Pag es, Adeline Bascaules, Patricia Jargeat, Fabienne Maillet, Alexandra Haouy, Arthur QuyManh Maes, Cristobal Carrera Carriel, Devanshi Khokhani, Michelle Keller-Pearson, Joanna Tannous, Kevin Cope, Kevin Garcia, Junko Maeda, Chad Johnson, Bailey Kleven, Quanita Choudhury, Jessy Labbe, Candice Swift, Michelle O'Malley, Jin Woo Bok, Sylvain Cottaz, Sebastien Fort, Véréna Poinsot, Michael Sussman, Corinne Lefort, Jeniel Nett, Nancy Keller, Guillaume Becard, and Jean-Michel Ané (2020) Lipo-chitooligosaccharides as regulatory signals of fungal

growth and development. Nature Communications, 11:3897, December 2020.

 Rekha Gopalan-Nair, Marie-Françoise Jardinaud, Ludovic Legrand, David Landry, Xavier Barlet, Céline Lopez-Roques, Céline Vandecasteele, Olivier Bouchez, Stéphane Genin, Alice Guidot (2020) Convergent Rewiring of the Virulence Regulatory Network Promotes Adaptation of Ralstonia solanacearum on Resistant Tomato. Molecular Biology and Evolution 2020. Dec 11;msaa320. doi: 10.1093/molbev/msaa320. Online ahead of print

Helene E Badouin, Amandine Velt, Fran cois Gindraud, Timoth ee Flutre, Vincent DUMAS, Sonia

Vautrin, William Marande, Jonathan Corbi, Erika Sallet, J er emy Ganofsky, Sylvain Santoni, Dominique

Guyot, Eugenia Ricciardelli, Kristen Jepsen, Jos Kafer, H el ene Berges, Eric Duchene,

Franck Picard, Philippe Hugueney, Raquel Tavares, Roberto Bacilieri, Camille Rustenholz, and

Gabriel Marais (2020) The wild grape genome sequence provides insights into the transition from dioecy

to hermaphroditism during grape domestication. Genome Biology. 21(1):223

Eliane Meilhoc, Justin Teissie, Electrotransformation of Saccharomyces cerevisiae. Methods in Molecular Biology, 2020. 2050: p. 187-193.

Justine Sucher, Malick Mbengue, Axel Dresen, Marielle Barascud, Marie Didelon, Adelin Barbacci, Sylvain Raffaelle (2020)  Phylotranscriptomics of the Pentapetalae Reveals Frequent Regulatory Variation in Plant Local Responses to the Fungal Pathogen Sclerotinia sclerotiorum The Plant cell. American Society of Plant Biologists (ASPB), 2020, 32 (6), pp.1820-1844.

Aleksandr Gavrin, Thomas Rey, Thomas Torode, Justine Toulotte, Abhishek Chatterjee et al.  Developmental Modulation of Root Cell Wall Architecture Confers Resistance to an Oomycete Pathogen. Current Biology - CB, Elsevier, 2020, 30, pp.1-12. ⟨10.1016/j.cub.2020.08.011⟩

Claire Benezech, Fathi Berrabah, Marie-Fran coise Jardinaud, Alexandre Le Scornet, Marine Milhes, Gaofey JIANG, Jeo rey George, Pascal Ratet, Fabienne Vailleau, and Benjamin Gourion (2020) Medicago-Sinorhizobium-Ralstonia Co-infection Reveals Legume Nodules as Pathogen Con ned Infection Sites Developing Weak Defenses. Current Biology.CB, 30(2):351{358, 2020a.

Claire Benezech, Fathi Berrabah, Marie-Françoise Jardinaud, Alexandre Le Scornet, Marine Milhes,  Gaofei Jiang, Jeoffrey George, Pascal Ratet, Fabienne Vailleau, Benjamin Gourion (2020) Medicago-Sinorhizobium-Ralstonia Co-infection Reveals Legume Nodules as Pathogen Confined Infection Sites Developing Weak Defenses. Current Biology - CB, Elsevier, 2020, 30 (2), pp.351-358. ⟨10.1016/j.cub.2019.11.066⟩

Yann Dussert, Ludovic Legrand, Isabelle D Mazet, Carole Couture, Marie-Christine Piron, Rémy-Félix Serre, Olivier Bouchez, Pere Mestre, Silvia Laura Toffolatti, Tatiana Giraud, François Delmotte. Identification of the First Oomycete Mating-type Locus Sequence in the Grapevine Downy Mildew Pathogen, Plasmopara viticola. Current Biology. 2020 Oct 19;30(20):3897-3907.e4

Tian Zeng, Luis Rodriguez-Moreno, Artem Mansurkhodzaev, Peng Wang, Willy van den Berg, Virginie Gasciolli, Sylvain Cottaz, Sébastien Fort, Bart P. H. J. Thomma, Jean-Jacques Bono, Ton Bisseling, Erik Limpens (2020) A lysin motif effector subverts chitin-triggered immunity to facilitate arbuscular mycorrhizal symbiosis. New Phytologist 2020. 225(1): p. 448-460.

Benoit Lefebvre (2020) An opportunity to breed rice for improved benefits from the arbuscular mycorrhizal symbiosis? New Phytologist 2020. 225(4): p. 1404-1406.

Dan Du, Changwei Zhang, Yadi Xing, Xin Lu, Linjun Cai, Han Yun, Qiuli Zhang, Yingying Zhang, Xinlong Chen, Mingming Liu, Xianchun Sang, Yinghua Ling, Zhenglin Yang , Yunfeng Li, Benoit Lefebvre, Guanghua He (2020) The CC-NB-LRR OsRLR1 mediates rice disease resistance through interaction with OsWRKY19; 

Plant Biotechnol Journal. 2020 Dec 26. doi: 10.1111/pbi.13530. Online ahead of print. 

Genre, A., Timmers, T. (2019). The symbiotic role of the actin filament cytoskeleton. New Phytologist, 221 (2), 611-613. 

Zeng, T., Rodriguez-Moreno, L., Mansurkhodzaev, A., Wang, P., van den Berg, W., Gasciolli, V., Cottaz, S., Fort, S., Thomma, B. P. H. J., Bono, J.-J., Bisseling, T., Limpens, E. (2019). A lysin motif effector subverts chitin-triggered immunity to facilitate arbuscular mycorrhizal symbiosis. New Phytologist, 225, 448–460.

Lefebvre, B. (2019). An opportunity to breed rice for improved benefits from the arbuscular mycorrhizal symbiosis?. New Phytologist, 1-3

Pfeilmeier, S., George, J., Morel, A. A., Roy, S., Smoker, M., Stransfeld, L., Downie, J. A., Peeters, N., Malone, J. G., Zipfel, C. (2019). Expression of the Arabidopsis thaliana immune receptor EFR in Medicago truncatula reduces infection by a root pathogenic bacterium, but not nitrogen-fixing rhizobial symbiosis. Plant Biotechnology Journal, 17 (3), 569-579. 

Liu, C.-W., Breakspear, A., Guan, D., Cerri, M., Jackson, K., Jiang, S., Robson, F., Radhakrishnan, G. V., Roy, S., Bone, C., Stacey, N., Rogers, C., Trick, M., Niebel, A., Oldroyd, G. E., De Carvalho-Niebel, F., Murray, J. D. (2019). NIN Acts as a Network Hub Controlling a Growth Module Required for Rhizobial Infection. Plant Physiology, 179 (4), 1704-1722.

Grund, E., Tremousaygue, D., Deslandes, L. (2019). Plant NLRs with integrated domains: Unity makes strength. Plant Physiology, 179 (), 1227-1235

Pecrix, Y., Buendia Martin, L. F., Penouilh-Suzette, C., Marechaux, M., Legrand, L., Bouchez, O., Rengel, D., Gouzy, J., Cottret, L., Vear, F., Godiard, L. (2019). Sunflower resistance to multiple downy mildew pathotypes revealed by recognition of conserved effectors of the oomycete Plasmopara halstedii. Plant Journal, 97 (4), 730-748.

Leonhardt, N., Divol, F., Chiarenza, S., Deschamps, S., Renaud, J., Giacalone, C., Nussaume, L., Berthomé, R., Peret, B. (2019). Tissue-specific inactivation by cytosine deaminase/uracil phosphoribosyl transferase as a tool to study plant biology. Plant Journal, 1-11. 

Bruand, C., Meilhoc, E. (2019). Nitric oxide in plants: pro- or anti-senescence. Journal of Experimental Botany, 70 (17) 4419-4427

Perrier, A., Barlet, X., Rengel, D., Prior, P., Poussier, S., Genin, S., Guidot, A. (2019). Spontaneous mutations in a regulatory gene induce phenotypic heterogeneity and adaptation of Ralstonia solanacearum to changing environments. Environmental Microbiology, 21 (8), 3140 - 3152.

Baena, I., Pérez-Mendoza, D., Sauviac, L., Francesch, K., Martín, M., Rivilla, R., Bonilla, I., Bruand, C., Sanjuán, J., Lloret, J. (2019). A partner-switching system controls activation of mixed-linkage β-glucan synthesis by c-di-GMP in Sinorhizobium meliloti. Environmental Microbiology

Bertrand, C., Thibessard, A., Bruand, C., Lecointe, F., Leblond, P. (2019). Bacterial NHEJ: a never ending story. Molecular Microbiology, 111 (5), 1139-1151.

Derbyshire, M., Mbengue, M., Barascud, M., Navaud, O., Raffaele, S. (2019). Small RNAs from the plant pathogenic fungus Sclerotinia sclerotiorum highlight host candidate genes associated with quantitative disease resistance. Molecular Plant Pathology, 20 (9), 1279-1297. 

Meline, V., Delage, W., Brin, C., Li Marchetti, C., Sochard, D., Arlat, M., Rousseau, C., Darrasse, A., Briand, M., Lebreton, G., Portier, P., Fisher, M., Durand, K., Jacques, M. A., Belin, E., Boureau, T. (2019). Role of the acquisition of a Type 3 Secretion System in the emergence of novel pathogenic strains of Xanthomonas . Molecular Plant Pathology, 20, 33-50. 

Frantzeskakis, L., Kusch, S., Panstruga, R. (2019). The need for speed: compartmentalized genome evolution in filamentous phytopathogens. Molecular Plant Pathology, 20 (1), 3-7

Benezech, C., Doudement, M., Gourion, B. (2019). Legumes tolerance to Rhizobia is not always observed and not always deserved. Cellular Microbiology, 1-9

Ruiz, B., Le Scornet, A., Sauviac, L., Rémy, A., Bruand, C., Meilhoc, E. (2019). The Nitrate Assimilatory Pathway in Sinorhizobium meliloti: Contribution to NO Production. Frontiers in Microbiology, 10. 

Gosseau, F., Blanchet, N., Vares, D., Burger, P., Campergue, D., Colombet, C., Gody, L., Liévin, J.-F., Mangin, B., Tison, G., Vincourt, P., Casadebaig, P., Langlade, N. (2019). Heliaphen, an outdoor high-throughput phenotyping platform for genetic studies and crop modeling. Frontiers in Plant Science, 9, 1-19. 

Calderon-Gonzalez, A., Pouilly, N., Munos, S., Grand, X., Coque, M., Velasco, L., Perez-Vich, B. (2019). An SSR-SNP Linkage Map of the Parasitic Weed Orobanche cumana Wallr. Including a Gene for Plant Pigmentation. Frontiers in Plant Science, 10, 1-10. 

Russo, G., Carotenuto, G., Fiorilli, V., Volpe, V., Faccio, A., Bonfante, P., Chabaud, M., Chiapello, M., Van Damme, D., Genre, A. (2019). TPLATE Recruitment Reveals Endocytic Dynamics at Sites of Symbiotic Interface Assembly in Arbuscular Mycorrhizal Interactions. Frontiers in Plant Science, 10, 1-9.

Pegot - Espagnet, P., Guillaume, O., Desprez, B., Devaux, B., Devaux, P., Henry, K., Henry, N., Willems, G., Goudemand, E., Mangin, B. (2019). Discovery of interesting new polymorphisms in a sugar beet (elite x exotic) progeny by comparison with an elite panel. Theoretical and Applied Genetics, 132 (11), 3063-3078. 

Reynolds, D., Baret, F., Welcker, C., Bostrom, Ball, Cellini, F., Lorence, A., Chawade, A., Khafif, M., Noshita, K., Mueller-Linow, M., Zhou, J., Tardieu, F. (2019). What is cost-efficient phenotyping? Optimizing costs for different scenarios. Plant Science, 282, 14-22.

Dussert, Y., Mazet, I. D., Couture, C., Gouzy, J., Piron, M.-C., Kuchly, C., Bouchez, O., Rispe, C., Mestre, P., Delmotte, F. (2019). A high-quality grapevine downy mildew genome assembly reveals rapidly evolving and lineage-specific putative host adaptation genes. Genome Biology and Evolution, 11 (3), 954-969. 

Moschen, S., Marino, J., Nicosia, S., Higgins, J., Alseekh, S., Astigueta, F., Bengoa Luoni, S., Rivarola, M., Fernie, A. R., Blanchet, N., Langlade, N., Paniego, N., Fernandez, P., Heinz, R. A. (2019). Exploring gene networks in two sunflower lines with contrasting leaf senescence phenotype using a system biology approach. BMC Plant Biology, 19 (1), 1-15

Berrabah, F., Ratet, P., Gourion, B. (2019). Legume Nodules: Massive Infection in the Absence of Defense Induction. Molecular Plant-microbe Interactions, 32 (1), 35-44

Mazo-Molina, C., Mainiero, S., Hind, S. R., Kraus, C. M., Vachev, M., Maviane Macia, F., Lindeberg, M., Saha, S., Strickler, S. R., Feder, A., Giovannoni, J. J., Smart, C. D., Peeters, N., Martin, G. B. (2019). The Ptr1 Locus of Solanum lycopersicoides Confers Resistance to Race 1 Strains of Pseudomonas syringae pv. tomato and to Ralstonia pseudosolanacearum by Recognizing the Type III Effectors AvrRpt2 and RipBN. Molecular Plant-Microbe Interactions, 32 (8), 949-960. 

Daubech, B., Poinsot, V., Klonowska, A., Capela, D., Chaintreuil, C., Moulin, L., Marchetti, M., Masson, C. (2019). noeM, a New Nodulation Gene Involved in the Biosynthesis of Nod Factors with an Open-Chain Oxidized Terminal Residue and in the Symbiosis with Mimosa pudica. Molecular Plant-Microbe Interactions, 32 (12), 1635 - 1648.

Tan, S., Debellé, F., Gamas, P., Frugier, F., Brault, M. (2019). Diversification of cytokinin phosphotransfer signaling genes in Medicago truncatula and other legume genomes. BMC Genomics, 20.

Demené, A., Legrand, L., Gouzy, J., Debuchy, R., Saint-Jean, G., Fabreguettes, O., Dutech, C. (2019). Whole-genome sequencing reveals recent and frequent genetic recombination between clonal lineages of Cryphonectria parasitica in western Europe. Fungal Genetics and Biology, 130, 122-133.

Fernandez, O. , Urrutia Rosauro, M., Berton, T., Bernillon, S., Deborde, C., Jacob, D., Maucourt, M., Maury, P., Durufle, H., Gibon, Y., Langlade, N., Moing, A. (2019). Metabolomic characterization of sunflower leaf allows discriminating genotype groups or stress levels with a minimal set of metabolic markers. Metabolomics, 15 (4), 56

Daval, S., Belcour, A., Gazengel, K., Legrand, L., Gouzy, J., Cottret, L., Lebreton, L., Aigu, Y., Mougel, C., Manzanares-Dauleux, M. (2019). Computational analysis of the Plasmodiophora brassicae genome: mitochondrial sequence description and metabolic pathway database design. Genomics, 11 (6), 1629-1640. 

El Amrani, A., Couee, I., Berthomé, R., Ramel, F., Gouesbet, G., Sulmon, C. (2019). Involvement of polyamines in sucrose-induced tolerance to atrazine-mediated chemical stress in Arabidopsis thaliana. Journal of Plant Physiology, 238, 1-11

Chiang, T.-Y., Derbyshire, M. C., Denton-Giles, M., Hane, J. K., Chang, S., Mousavi-Derazmahalleh, M., Raffaele, S., Buchwaldt, L., Kamphuis, L. G. (2019). A whole genome scan of SNP data suggests a lack of abundant hard selective sweeps in the genome of the broad host range plant pathogenic fungus Sclerotinia sclerotiorum. Plos One, 14 (3), e0214201

Mangin, B., Rincent, R., Rabier, C.-E., Moreau, L., Goudemand-Dugue, E. (2019). Training set optimization of genomic prediction by means of EthAcc. Plos One, 14 (2). 

Combier, M., Evangelisti, E., Piron, M.-C., Rengel, D., Legrand, L., Shenhav, L., Bouchez, O., Schornack, S., Mestre, P.-F. (2019). A secreted WY-domain-containing protein present in European isolates of the oomycete Plasmopara viticola induces cell death in grapevine and tobacco species. Plos One, 14 (7), 1-22. 

Le Cam, B., Sargent, D., Gouzy, J., Amselem, J., Bellanger, M.-N., Bouchez, O., Brown, S., Caffier, V., De Gracia, M., Debuchy, R., Duvaux, L., Payen, T., Sannier, M., Shiller, J., Collemare, J., Lemaire, C. (2019). Population Genome Sequencing of the Scab Fungal Species Venturia inaequalis, Venturia pirina, Venturia aucupariae and Venturia asperata. G3 - Genes Genomes Genetics, 9 (8), 2405-2414. , DOI : 10.1534/g3.119.400047

Sabbagh, C., Carrère, S., Lonjon, F., Vailleau, F., Macho, A. P., Génin, S., Peeters, N. (2019). Pangenomic type III effector database of the plant pathogenic Ralstonia spp. PeerJ, 7, 1-21.

Buendia , L., Ribeyre, C., Bensmihen, S., Lefebvre, B. (2019). Brachypodium distachyon tar2l(hypo) mutant shows reduced root developmental response to symbiotic signal but increased arbuscular mycorrhiza. Plant Signaling and Behavior.

Rabier, C.-E., Mangin, B., Grusea, S. (2019). On the accuracy in high‐dimensional linear models and its application to genomic selection. Scandinavian Journal of Statistics, 46 (1), 289-313.

Hufnagel, B., Marques, A., Soriano, A., Marquès, L., Divol, F., Doumas, P., Sallet, E., Mancinotti, D., Carrere, S., Marande, W., Arribat, S., Keller, J., Huneau, C., Blein, T., Aime, D., Laguerre, M., Taylor, J., Schubert, V., Nelson, M., Geu-Flores, Crespi, M., Gallardo-Guerrero, K., Delaux, P.-M., Salse, J., Berges, H., Guyot, R., Gouzy, J., PERET, B. (2019). Genome sequence of the cluster root forming white lupin USA : BioRxiv

Bourion, V., Pinochet, X., Debellé, F. (2019). Recherche des meilleurs couples pois-rhizobia. Premiers résultats et perspectives. Séléctionneur Français, 70, 77-85